• Chemists show how RNA might have started to make proteins on early Earth

    From Pro Plyd@invalide@invalid.invalid to talk-origins on Wed Aug 27 23:01:24 2025
    From Newsgroup: talk.origins


    https://phys.org/news/2025-08-chemists-rna-proteins-early-earth.html

    Chemists at University College London have shown
    how two of biology's most fundamental ingredients,
    RNA (ribonucleic acid) and amino acids, could have
    spontaneously joined together at the origin of life
    four billion years ago.

    Amino acids are the building blocks of proteins,
    the "workhorses" of life essential to nearly every
    living process. But proteins cannot replicate or
    produce themselvesrCothey require instructions. These
    instructions are provided by RNA, a close chemical
    cousin of DNA (deoxyribonucleic acid).

    In a new study, published in Nature, researchers
    chemically linked life's amino acids to RNA in
    conditions that could have occurred on early
    EarthrCoan achievement that has eluded scientists
    since the early 1970s.
    ...

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  • From MarkE@me22over7@gmail.com to talk-origins on Thu Aug 28 22:08:52 2025
    From Newsgroup: talk.origins

    On 28/08/2025 3:01 pm, Pro Plyd wrote:

    https://phys.org/news/2025-08-chemists-rna-proteins-early-earth.html

    Chemists at University College London have shown
    how two of biology's most fundamental ingredients,
    RNA (ribonucleic acid) and amino acids, could have
    spontaneously joined together at the origin of life
    four billion years ago.

    Amino acids are the building blocks of proteins,
    the "workhorses" of life essential to nearly every
    living process. But proteins cannot replicate or
    produce themselvesrCothey require instructions. These
    instructions are provided by RNA, a close chemical
    cousin of DNA (deoxyribonucleic acid).

    In a new study, published in Nature, researchers
    chemically linked life's amino acids to RNA in
    conditions that could have occurred on early
    EarthrCoan achievement that has eluded scientists
    since the early 1970s.
    ...


    "Our study brings us closer to that goal by demonstrating how two
    primordial chemical LEGO pieces (activated amino acids and RNA) could
    have built peptides, short chains of amino acids that are essential to
    life."

    This is prebiotic, which by definition precedes Darwinian evolution,
    i.e. replication with random variation acted upon by natural selection resulting in differential reproductive success.

    Therefore, even if random "short chains of amino acids" could be
    produced, how do they become functional? Or more completely, how do we
    get to a minimal entity capable of self-replication?

    Self-replication in this context will have a high dependency on specific environmental conditions compared with a modern cell.

    Because any conceivable "minimal entity capable of self-replication"
    will be far too complex for random, chance formation, any realistic naturalistic hypothesis must provide a process of "chemical evolution".

    What's your preferred hypothesis?

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  • From RonO@rokimoto557@gmail.com to talk-origins on Thu Aug 28 11:09:43 2025
    From Newsgroup: talk.origins

    On 8/28/2025 12:01 AM, Pro Plyd wrote:

    https://phys.org/news/2025-08-chemists-rna-proteins-early-earth.html

    Chemists at University College London have shown
    how two of biology's most fundamental ingredients,
    RNA (ribonucleic acid) and amino acids, could have
    spontaneously joined together at the origin of life
    four billion years ago.

    Amino acids are the building blocks of proteins,
    the "workhorses" of life essential to nearly every
    living process. But proteins cannot replicate or
    produce themselvesrCothey require instructions. These
    instructions are provided by RNA, a close chemical
    cousin of DNA (deoxyribonucleic acid).

    In a new study, published in Nature, researchers
    chemically linked life's amino acids to RNA in
    conditions that could have occurred on early
    EarthrCoan achievement that has eluded scientists
    since the early 1970s.
    ...


    This really isn't necessary. A few months ago we were going around
    MarkE's usual ool gap denial and I posted about ribozyme synthetases
    that charged tRNAs with amino acids. This means that once RNA polymers
    were being replicated that tRNAs could evolve and be charged with amino
    acids by synthetases made of RNA. My guess is that tRNAs first evolved
    to keep needed amino acids inside of the cell. If you bind an amino
    acid to a tRNA it is less likely to defuse out of the cell. Some amino
    acids are needed to make nucleotides. What they need to solve is why
    RNA was first made. My guess is that nucleotides were used for the same things in the early self replicators as they are used for today. They
    are energy transfer molecules (ATP, GTP, CTP, TTP). You could store the nucleotides as a RNA polymer in order to keep them from being lost from
    the early cells. This would be before the genetic code evolved.

    Ron Okimoto

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  • From RonO@rokimoto557@gmail.com to talk-origins on Thu Aug 28 16:09:15 2025
    From Newsgroup: talk.origins

    On 8/28/2025 11:09 AM, RonO wrote:
    On 8/28/2025 12:01 AM, Pro Plyd wrote:

    https://phys.org/news/2025-08-chemists-rna-proteins-early-earth.html

    Chemists at University College London have shown
    how two of biology's most fundamental ingredients,
    RNA (ribonucleic acid) and amino acids, could have
    spontaneously joined together at the origin of life
    four billion years ago.

    Amino acids are the building blocks of proteins,
    the "workhorses" of life essential to nearly every
    living process. But proteins cannot replicate or
    produce themselvesrCothey require instructions. These
    instructions are provided by RNA, a close chemical
    cousin of DNA (deoxyribonucleic acid).

    In a new study, published in Nature, researchers
    chemically linked life's amino acids to RNA in
    conditions that could have occurred on early
    EarthrCoan achievement that has eluded scientists
    since the early 1970s.
    ...


    This really isn't necessary.-a A few months ago we were going around
    MarkE's usual ool gap denial and I posted about ribozyme synthetases
    that charged tRNAs with amino acids.-a This means that once RNA polymers were being replicated that tRNAs could evolve and be charged with amino acids by synthetases made of RNA.-a My guess is that tRNAs first evolved
    to keep needed amino acids inside of the cell.-a If you bind an amino
    acid to a tRNA it is less likely to defuse out of the cell.-a Some amino acids are needed to make nucleotides.-a What they need to solve is why
    RNA was first made.-a My guess is that nucleotides were used for the same things in the early self replicators as they are used for today.-a They
    are energy transfer molecules (ATP, GTP, CTP, TTP).-a You could store the nucleotides as a RNA polymer in order to keep them from being lost from
    the early cells.-a This would be before the genetic code evolved.

    Ron Okimoto


    https://www.nature.com/articles/s41586-025-09388-y

    The article is open access and they do make the claim that "So far,
    there have been no chemical methods to effectively and selectively aminoacylate RNA-2rC#,3rC#-diols with the breadth of proteinogenic amino
    acids in water3,4,5.". This is true, but it is negated by the fact that ribozymes (RNA polymers with enzymatic activity) exist that will charge
    tRNAs with specific amino acids. You can even change the sequence of
    the ribozymes so that they charge the tRNAs with the D form of the amino
    acid instead of the L form. This means that the initial RNA protein
    synthesis could have evolved to either use L or D amino acids. My guess
    is that L amino acids were chosen because they were the ones used to
    make nucleotides.

    A water soluble chemical reaction isn't needed if you have an enzyme
    that will do the job. If tRNA RNA polymers existed the ribozyme RNA
    polymers could have evolved along with the Ribozyme peptidase that
    joined the amino acids together.

    Ron Okimoto

    Ron Okimoto

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  • From Dale@dalekellytoo@gmail.com to talk-origins on Sat Aug 30 14:23:49 2025
    From Newsgroup: talk.origins

    On 8/28/2025 1:01 AM, Pro Plyd wrote:
    Chemists at University College London have shown
    how two of biology's most fundamental ingredients,
    RNA (ribonucleic acid) and amino acids, could have
    spontaneously joined together at the origin of life
    four billion years ago.


    did they test a full deduction or induction ?

    https://en.wikipedia.org/wiki/Inductive_reasoning

    https://en.wikipedia.org/wiki/Deductive_reasoning


    was the full induction or deduction reversible ?

    https://en.wikipedia.org/wiki/Hypothesis

    does a partial induction or deduction require a look at a full one ?

    does a full induction or deduction require a look at a partial one ?


    a statistical assumption ?

    https://en.wikipedia.org/wiki/Statistical_assumption


    what value does the decision have ?
    --
    Mystery? -> https://www.dalekelly.org/

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  • From Dale@dalekellytoo@gmail.com to talk-origins on Sun Aug 31 02:46:26 2025
    From Newsgroup: talk.origins

    On 8/28/2025 1:01 AM, Pro Plyd wrote:
    In a new study, published in Nature, researchers
    chemically linked life's amino acids to RNA in
    conditions that could have occurred on early
    EarthrCoan achievement that has eluded scientists
    since the early 1970s.


    what is the t-test and f-test of this sample ?

    average ?

    https://en.wikipedia.org/wiki/T-statistic

    https://en.wikipedia.org/wiki/Student's_t-test


    variance ?

    https://en.wikipedia.org/wiki/F-test
    --
    Mystery? -> https://www.dalekelly.org/

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