• recreate the moa?

    From RonO@rokimoto557@gmail.com to talk-origins on Mon Jul 14 08:18:54 2025
    From Newsgroup: talk.origins

    https://www.nbcnews.com/nightly-news/video/researchers-launch-new-effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address. Colossal Bioscience efforts seem to be more of a scam than science. They know
    that they can't recreate these extinct animals, and all they are doing
    is replacing a few genes (sometimes not even the correct mutations to
    recreate the pheontype of the extinct species). There is no reason to
    do this, and there is absolutely no reason to try to reintroduce such
    bogus pets into some niche where they have not been adapted to belong to
    any longer. Adaptation to a specific environment is more than just
    cosmetic changes.

    They claim to be using closely related species, but the video shows manipulation of an ostrich egg. They'd likely be better off starting
    with a tinamou or kiwi. The kiwi would be expected to be more closely
    related than an ostrich and it was once a very large bird, but reduced
    it's body size while maintaining a large egg size.

    Ron Okimoto

    --- Synchronet 3.21a-Linux NewsLink 1.2
  • From RonO@rokimoto557@gmail.com to talk-origins on Mon Jul 14 14:46:45 2025
    From Newsgroup: talk.origins

    On 7/14/2025 9:24 AM, John Harshman wrote:
    On 7/14/25 6:18 AM, RonO wrote:
    https://www.nbcnews.com/nightly-news/video/researchers-launch-new-
    effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address.
    Colossal Bioscience efforts seem to be more of a scam than science.
    They know that they can't recreate these extinct animals, and all they
    are doing is replacing a few genes (sometimes not even the correct
    mutations to recreate the pheontype of the extinct species).-a There is
    no reason to do this, and there is absolutely no reason to try to
    reintroduce such bogus pets into some niche where they have not been
    adapted to belong to any longer.-a Adaptation to a specific environment
    is more than just cosmetic changes.

    They claim to be using closely related species, but the video shows
    manipulation of an ostrich egg.-a They'd likely be better off starting
    with a tinamou or kiwi.-a The kiwi would be expected to be more closely
    related than an ostrich and it was once a very large bird, but reduced
    it's body size while maintaining a large egg size.

    But kiwis aren't very closely related to moas. They're closer to
    elephant birds. It's the tinamous you would need, except that tinamous
    are very fast-evolving and are probably genetically farther from moas
    than some other paleognath would be. There would be no good solution, if they were actually serious about this. Which they aren't.


    Kiwis are still more closely related to moa than ostriches. Even emu
    would be more closely related to moa than ostriches.

    Are tinamou fast evolving? They seem to be the only ratite that
    retained flight capability. Isn't it likely that the ancestors of Kiwi,
    moa and elephant birds flew to their island homes? I would think that flightless ratites would have evolved faster in a more degenerative way
    than tinamou.

    Ron Okimoto

    --- Synchronet 3.21a-Linux NewsLink 1.2
  • From John Harshman@john.harshman@gmail.com to talk-origins on Mon Jul 14 15:47:34 2025
    From Newsgroup: talk.origins

    On 7/14/25 12:46 PM, RonO wrote:
    On 7/14/2025 9:24 AM, John Harshman wrote:
    On 7/14/25 6:18 AM, RonO wrote:
    https://www.nbcnews.com/nightly-news/video/researchers-launch-new-
    effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address.
    Colossal Bioscience efforts seem to be more of a scam than science.
    They know that they can't recreate these extinct animals, and all
    they are doing is replacing a few genes (sometimes not even the
    correct mutations to recreate the pheontype of the extinct species).
    There is no reason to do this, and there is absolutely no reason to
    try to reintroduce such bogus pets into some niche where they have
    not been adapted to belong to any longer.-a Adaptation to a specific
    environment is more than just cosmetic changes.

    They claim to be using closely related species, but the video shows
    manipulation of an ostrich egg.-a They'd likely be better off starting
    with a tinamou or kiwi.-a The kiwi would be expected to be more
    closely related than an ostrich and it was once a very large bird,
    but reduced it's body size while maintaining a large egg size.

    But kiwis aren't very closely related to moas. They're closer to
    elephant birds. It's the tinamous you would need, except that tinamous
    are very fast-evolving and are probably genetically farther from moas
    than some other paleognath would be. There would be no good solution,
    if they were actually serious about this. Which they aren't.


    Kiwis are still more closely related to moa than ostriches.-a Even emu
    would be more closely related to moa than ostriches.

    Are tinamou fast evolving?

    Yes, pretty much genome-wide.

    They seem to be the only ratite that
    retained flight capability.

    Technically, they're not ratites, which term applies to a polyphyletic
    group of flightless birds.

    Isn't it likely that the ancestors of Kiwi,
    moa and elephant birds flew to their island homes?

    Probably.

    I would think that
    flightless ratites would have evolved faster in a more degenerative way
    than tinamou.

    Not clear what you meant by that. But genome evolution isn't
    particularly correlated to morphological evolution.

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  • From John Harshman@john.harshman@gmail.com to talk-origins on Mon Jul 14 07:24:49 2025
    From Newsgroup: talk.origins

    On 7/14/25 6:18 AM, RonO wrote:
    https://www.nbcnews.com/nightly-news/video/researchers-launch-new-effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address.-a Colossal Bioscience efforts seem to be more of a scam than science.-a They know
    that they can't recreate these extinct animals, and all they are doing
    is replacing a few genes (sometimes not even the correct mutations to recreate the pheontype of the extinct species).-a There is no reason to
    do this, and there is absolutely no reason to try to reintroduce such
    bogus pets into some niche where they have not been adapted to belong to
    any longer.-a Adaptation to a specific environment is more than just cosmetic changes.

    They claim to be using closely related species, but the video shows manipulation of an ostrich egg.-a They'd likely be better off starting
    with a tinamou or kiwi.-a The kiwi would be expected to be more closely related than an ostrich and it was once a very large bird, but reduced
    it's body size while maintaining a large egg size.

    But kiwis aren't very closely related to moas. They're closer to
    elephant birds. It's the tinamous you would need, except that tinamous
    are very fast-evolving and are probably genetically farther from moas
    than some other paleognath would be. There would be no good solution, if
    they were actually serious about this. Which they aren't.

    --- Synchronet 3.21a-Linux NewsLink 1.2
  • From RonO@rokimoto557@gmail.com to talk-origins on Tue Jul 15 08:18:58 2025
    From Newsgroup: talk.origins

    On 7/14/2025 5:47 PM, John Harshman wrote:
    On 7/14/25 12:46 PM, RonO wrote:
    On 7/14/2025 9:24 AM, John Harshman wrote:
    On 7/14/25 6:18 AM, RonO wrote:
    https://www.nbcnews.com/nightly-news/video/researchers-launch-new-
    effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address.
    Colossal Bioscience efforts seem to be more of a scam than science.
    They know that they can't recreate these extinct animals, and all
    they are doing is replacing a few genes (sometimes not even the
    correct mutations to recreate the pheontype of the extinct species).
    There is no reason to do this, and there is absolutely no reason to
    try to reintroduce such bogus pets into some niche where they have
    not been adapted to belong to any longer.-a Adaptation to a specific
    environment is more than just cosmetic changes.

    They claim to be using closely related species, but the video shows
    manipulation of an ostrich egg.-a They'd likely be better off
    starting with a tinamou or kiwi.-a The kiwi would be expected to be
    more closely related than an ostrich and it was once a very large
    bird, but reduced it's body size while maintaining a large egg size.

    But kiwis aren't very closely related to moas. They're closer to
    elephant birds. It's the tinamous you would need, except that
    tinamous are very fast-evolving and are probably genetically farther
    from moas than some other paleognath would be. There would be no good
    solution, if they were actually serious about this. Which they aren't.


    Kiwis are still more closely related to moa than ostriches.-a Even emu
    would be more closely related to moa than ostriches.

    Are tinamou fast evolving?

    Yes, pretty much genome-wide.

    They seem to be the only ratite that retained flight capability.

    Technically, they're not ratites, which term applies to a polyphyletic
    group of flightless birds.

    They nest firmly within ratites. As far as I know tinamou are the only
    member of the lineage that retained flight capability. They all occupy
    a lineage that is likely the oldest branch point for extant birds.


    Isn't it likely that the ancestors of Kiwi, moa and elephant birds
    flew to their island homes?

    Probably.

    I would think that flightless ratites would have evolved faster in a
    more degenerative way than tinamou.

    Not clear what you meant by that. But genome evolution isn't
    particularly correlated to morphological evolution.


    There would be relaxed selection all over the genome when the genes that
    were required for flight no longer had the positive selection pressure
    that they once had. Those genes and the region around them, due to
    linkage drag, would have been expected to be subject to more neutral evolution. When mutations are selected against you don't just lose the mutation that is being selected against, but all the surrounding recent neutral mutations are also selected against due to linkage with the deleterious variant.

    Ron Okimoto

    --- Synchronet 3.21a-Linux NewsLink 1.2
  • From John Harshman@john.harshman@gmail.com to talk-origins on Tue Jul 15 12:12:29 2025
    From Newsgroup: talk.origins

    On 7/15/25 6:18 AM, RonO wrote:
    On 7/14/2025 5:47 PM, John Harshman wrote:
    On 7/14/25 12:46 PM, RonO wrote:
    On 7/14/2025 9:24 AM, John Harshman wrote:
    On 7/14/25 6:18 AM, RonO wrote:
    https://www.nbcnews.com/nightly-news/video/researchers-launch-new-
    effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address.
    Colossal Bioscience efforts seem to be more of a scam than science. >>>>> They know that they can't recreate these extinct animals, and all
    they are doing is replacing a few genes (sometimes not even the
    correct mutations to recreate the pheontype of the extinct
    species). There is no reason to do this, and there is absolutely no >>>>> reason to try to reintroduce such bogus pets into some niche where
    they have not been adapted to belong to any longer.-a Adaptation to >>>>> a specific environment is more than just cosmetic changes.

    They claim to be using closely related species, but the video shows >>>>> manipulation of an ostrich egg.-a They'd likely be better off
    starting with a tinamou or kiwi.-a The kiwi would be expected to be >>>>> more closely related than an ostrich and it was once a very large
    bird, but reduced it's body size while maintaining a large egg size.

    But kiwis aren't very closely related to moas. They're closer to
    elephant birds. It's the tinamous you would need, except that
    tinamous are very fast-evolving and are probably genetically farther
    from moas than some other paleognath would be. There would be no
    good solution, if they were actually serious about this. Which they
    aren't.


    Kiwis are still more closely related to moa than ostriches.-a Even emu
    would be more closely related to moa than ostriches.

    Are tinamou fast evolving?

    Yes, pretty much genome-wide.

    They seem to be the only ratite that retained flight capability.

    Technically, they're not ratites, which term applies to a polyphyletic
    group of flightless birds.

    They nest firmly within ratites.-a As far as I know tinamou are the only member of the lineage that retained flight capability.-a They all occupy
    a lineage that is likely the oldest branch point for extant birds.

    Yes, they nest within ratites, which is the same as ratites being at
    least paraphyletic. But as ratites are defined by flightlessness and the absence of a keel, we must suppose that this state arose at least four
    times, probably more, making ratites polyphyletic. The name of that
    lineage is not "ratites"; it's "Palaeognathae".

    And it isn't the oldest branch point for extant birds. That would be the separation between paleognaths and neognaths.

    Isn't it likely that the ancestors of Kiwi, moa and elephant birds
    flew to their island homes?

    Probably.

    I would think that flightless ratites would have evolved faster in a
    more degenerative way than tinamou.

    Not clear what you meant by that. But genome evolution isn't
    particularly correlated to morphological evolution.

    There would be relaxed selection all over the genome when the genes that were required for flight no longer had the positive selection pressure
    that they once had.

    You must understand that only a few percent of the genome is under
    selection in either flying or flightless birds. Most of the genome is
    junk. And birds have short introns, but even so, the majority of the
    average bird gene is still intron, and so mostly junk itself.

    Those genes and the region around them, due to
    linkage drag, would have been expected to be subject to more neutral evolution.-a When mutations are selected against you don't just lose the mutation that is being selected against, but all the surrounding recent neutral mutations are also selected against due to linkage with the deleterious variant.

    Another thing: avian linkage groups seem by most accounts to be very
    short, a few hundred bases at most. So hitchhiking is a very weak force
    in birds, even if the genes affected by flightlessness were many.

    Anyway, it turns out that the tinamou genomes evolve much more quickly
    than ratite genomes, so your expectations are confounded directly. See,
    for example, Harshman J., Braun E.L., Braun M.J., Huddleston C.J., Bowie R.C.K., Chojnowski J.L., Hackett S.J., Han K.-L., Kimball R.T., Marks
    B.D., Miglia K.J., Moore W.S., Reddy S., Sheldon F.H., Steadman D.W.,
    Steppan S.J., Witt C.C., Yuri T. Phylogenomic evidence for multiple
    losses of flight in ratite birds. Proceedings of the National Academy of Sciences 2008; 105:13462-12467.


    --- Synchronet 3.21a-Linux NewsLink 1.2
  • From RonO@rokimoto557@gmail.com to talk-origins on Tue Jul 15 17:00:29 2025
    From Newsgroup: talk.origins

    On 7/15/2025 2:12 PM, John Harshman wrote:
    On 7/15/25 6:18 AM, RonO wrote:
    On 7/14/2025 5:47 PM, John Harshman wrote:
    On 7/14/25 12:46 PM, RonO wrote:
    On 7/14/2025 9:24 AM, John Harshman wrote:
    On 7/14/25 6:18 AM, RonO wrote:
    https://www.nbcnews.com/nightly-news/video/researchers-launch-new- >>>>>> effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address.
    Colossal Bioscience efforts seem to be more of a scam than
    science. They know that they can't recreate these extinct animals, >>>>>> and all they are doing is replacing a few genes (sometimes not
    even the correct mutations to recreate the pheontype of the
    extinct species). There is no reason to do this, and there is
    absolutely no reason to try to reintroduce such bogus pets into
    some niche where they have not been adapted to belong to any
    longer.-a Adaptation to a specific environment is more than just
    cosmetic changes.

    They claim to be using closely related species, but the video
    shows manipulation of an ostrich egg.-a They'd likely be better off >>>>>> starting with a tinamou or kiwi.-a The kiwi would be expected to be >>>>>> more closely related than an ostrich and it was once a very large >>>>>> bird, but reduced it's body size while maintaining a large egg size. >>>>>
    But kiwis aren't very closely related to moas. They're closer to
    elephant birds. It's the tinamous you would need, except that
    tinamous are very fast-evolving and are probably genetically
    farther from moas than some other paleognath would be. There would
    be no good solution, if they were actually serious about this.
    Which they aren't.


    Kiwis are still more closely related to moa than ostriches.-a Even
    emu would be more closely related to moa than ostriches.

    Are tinamou fast evolving?

    Yes, pretty much genome-wide.

    They seem to be the only ratite that retained flight capability.

    Technically, they're not ratites, which term applies to a
    polyphyletic group of flightless birds.

    They nest firmly within ratites.-a As far as I know tinamou are the
    only member of the lineage that retained flight capability.-a They all
    occupy a lineage that is likely the oldest branch point for extant birds.

    Yes, they nest within ratites, which is the same as ratites being at
    least paraphyletic. But as ratites are defined by flightlessness and the absence of a keel, we must suppose that this state arose at least four times, probably more, making ratites polyphyletic. The name of that
    lineage is not "ratites"; it's "Palaeognathae".

    And it isn't the oldest branch point for extant birds. That would be the separation between paleognaths and neognaths.

    Isn't it likely that the ancestors of Kiwi, moa and elephant birds
    flew to their island homes?

    Probably.

    I would think that flightless ratites would have evolved faster in a
    more degenerative way than tinamou.

    Not clear what you meant by that. But genome evolution isn't
    particularly correlated to morphological evolution.

    There would be relaxed selection all over the genome when the genes
    that were required for flight no longer had the positive selection
    pressure that they once had.

    You must understand that only a few percent of the genome is under
    selection in either flying or flightless birds. Most of the genome is
    junk. And birds have short introns, but even so, the majority of the
    average bird gene is still intron, and so mostly junk itself.

    That few percent is scattered around the genome.


    Those genes and the region around them, due to linkage drag, would
    have been expected to be subject to more neutral evolution.-a When
    mutations are selected against you don't just lose the mutation that
    is being selected against, but all the surrounding recent neutral
    mutations are also selected against due to linkage with the
    deleterious variant.

    Another thing: avian linkage groups seem by most accounts to be very
    short, a few hundred bases at most. So hitchhiking is a very weak force
    in birds, even if the genes affected by flightlessness were many.

    A centiMorgan is around 1/3 as long on macrochromosomes (around 300,000
    bp compared with 1 million for mammals), but goes down to around 1/40 on microchromosomes (between 25,000 and 50,000 bp). It has taken around
    60,000 years to reduce the Neanderthal genome sequence to around 25 kb fragments in extant human genomes. Linkage drag would still be
    significant on the macrochromosomes of birds.


    Anyway, it turns out that the tinamou genomes evolve much more quickly
    than ratite genomes, so your expectations are confounded directly. See,
    for example, Harshman J., Braun E.L., Braun M.J., Huddleston C.J., Bowie R.C.K., Chojnowski J.L., Hackett S.J., Han K.-L., Kimball R.T., Marks
    B.D., Miglia K.J., Moore W.S., Reddy S., Sheldon F.H., Steadman D.W., Steppan S.J., Witt C.C., Yuri T. Phylogenomic evidence for multiple
    losses of flight in ratite birds. Proceedings of the National Academy of Sciences 2008;-a 105:13462-12467.



    Just not what I would have expected.

    Ron Okimoto

    --- Synchronet 3.21a-Linux NewsLink 1.2
  • From John Harshman@john.harshman@gmail.com to talk-origins on Tue Jul 15 17:01:21 2025
    From Newsgroup: talk.origins

    On 7/15/25 3:00 PM, RonO wrote:
    On 7/15/2025 2:12 PM, John Harshman wrote:
    On 7/15/25 6:18 AM, RonO wrote:
    On 7/14/2025 5:47 PM, John Harshman wrote:
    On 7/14/25 12:46 PM, RonO wrote:
    On 7/14/2025 9:24 AM, John Harshman wrote:
    On 7/14/25 6:18 AM, RonO wrote:
    https://www.nbcnews.com/nightly-news/video/researchers-launch-new- effort-to-revive-extinct-species-243142725747

    I do not know how long the video will be at this link address.
    Colossal Bioscience efforts seem to be more of a scam than
    science. They know that they can't recreate these extinct
    animals, and all they are doing is replacing a few genes
    (sometimes not even the correct mutations to recreate the
    pheontype of the extinct species). There is no reason to do this, >>>>>>> and there is absolutely no reason to try to reintroduce such
    bogus pets into some niche where they have not been adapted to
    belong to any longer.-a Adaptation to a specific environment is >>>>>>> more than just cosmetic changes.

    They claim to be using closely related species, but the video
    shows manipulation of an ostrich egg.-a They'd likely be better >>>>>>> off starting with a tinamou or kiwi.-a The kiwi would be expected >>>>>>> to be more closely related than an ostrich and it was once a very >>>>>>> large bird, but reduced it's body size while maintaining a large >>>>>>> egg size.

    But kiwis aren't very closely related to moas. They're closer to
    elephant birds. It's the tinamous you would need, except that
    tinamous are very fast-evolving and are probably genetically
    farther from moas than some other paleognath would be. There would >>>>>> be no good solution, if they were actually serious about this.
    Which they aren't.


    Kiwis are still more closely related to moa than ostriches.-a Even
    emu would be more closely related to moa than ostriches.

    Are tinamou fast evolving?

    Yes, pretty much genome-wide.

    They seem to be the only ratite that retained flight capability.

    Technically, they're not ratites, which term applies to a
    polyphyletic group of flightless birds.

    They nest firmly within ratites.-a As far as I know tinamou are the
    only member of the lineage that retained flight capability.-a They all
    occupy a lineage that is likely the oldest branch point for extant
    birds.

    Yes, they nest within ratites, which is the same as ratites being at
    least paraphyletic. But as ratites are defined by flightlessness and
    the absence of a keel, we must suppose that this state arose at least
    four times, probably more, making ratites polyphyletic. The name of
    that lineage is not "ratites"; it's "Palaeognathae".

    And it isn't the oldest branch point for extant birds. That would be
    the separation between paleognaths and neognaths.

    Isn't it likely that the ancestors of Kiwi, moa and elephant birds
    flew to their island homes?

    Probably.

    I would think that flightless ratites would have evolved faster in
    a more degenerative way than tinamou.

    Not clear what you meant by that. But genome evolution isn't
    particularly correlated to morphological evolution.

    There would be relaxed selection all over the genome when the genes
    that were required for flight no longer had the positive selection
    pressure that they once had.

    You must understand that only a few percent of the genome is under
    selection in either flying or flightless birds. Most of the genome is
    junk. And birds have short introns, but even so, the majority of the
    average bird gene is still intron, and so mostly junk itself.

    That few percent is scattered around the genome.

    True, but since linkage groups are so small, their influence doesn't
    stretch beyond that few percent.

    Those genes and the region around them, due to linkage drag, would
    have been expected to be subject to more neutral evolution.-a When
    mutations are selected against you don't just lose the mutation that
    is being selected against, but all the surrounding recent neutral
    mutations are also selected against due to linkage with the
    deleterious variant.

    Another thing: avian linkage groups seem by most accounts to be very
    short, a few hundred bases at most. So hitchhiking is a very weak
    force in birds, even if the genes affected by flightlessness were many.

    A centiMorgan is around 1/3 as long on macrochromosomes (around 300,000
    bp compared with 1 million for mammals), but goes down to around 1/40 on microchromosomes (between 25,000 and 50,000 bp).-a It has taken around 60,000 years to reduce the Neanderthal genome sequence to around 25 kb fragments in extant human genomes.-a Linkage drag would still be
    significant on the macrochromosomes of birds.

    Empirically, that seems not to be the case.

    Anyway, it turns out that the tinamou genomes evolve much more quickly
    than ratite genomes, so your expectations are confounded directly.
    See, for example, Harshman J., Braun E.L., Braun M.J., Huddleston
    C.J., Bowie R.C.K., Chojnowski J.L., Hackett S.J., Han K.-L., Kimball
    R.T., Marks B.D., Miglia K.J., Moore W.S., Reddy S., Sheldon F.H.,
    Steadman D.W., Steppan S.J., Witt C.C., Yuri T. Phylogenomic evidence
    for multiple losses of flight in ratite birds. Proceedings of the
    National Academy of Sciences 2008;-a 105:13462-12467.

    Just not what I would have expected.

    I don't think your expectations were all that reasonable. But no matter,
    the important point is that they turn out not to have been realized.

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